OSU Home Page

Chemistry the Central Science
Dr. Richard Spinney

OSU Dept of Chemistry
OSU Dept. of Chemistry

Molecular Modeling Resources

The Hydrogen Atomic Orbitals A visual guide to the wavefunctions and probability distribution of the Hydrogen Atomic Orbitals using Jmol.
The Chemical Bond: an Orbital Perspective A visual guide to the formation of Sigma (σ) and Pi (π) bonds using Jmol
Valence Bond Theory and Hybridization A visual guide to Valence Bond Theory and Hybridization using Jmol
Molecular Orbital Theory A visual guide to MO theory using diatomics and π systems (using Jmol)
Molecular Modeling A brief introduction to Molecular Modeling including Molecular Mechanics, Semi-empirical and ab inito methods.
Molecular Playground A JSmol based tool for creating molecular structures
JSmol Editor Another JSmol based tool for creating molecular structures
NGL NGL a tool for visualizing crystal structures
JSmol validation JSmol Protein validaion page
Hack-a-Mol Hack-a-Mol a tool for cheminformatics
OnLine Cheminformatics Course Cheminformatics at University of Arkansas Little Rock 2015
OnLine Cheminformatics Course Cheminformatics at University of Arkansas Little Rock 2017
OnLine Cheminformatics Course Cheminformatics OLCC 2019
Spartan A brief introduction to using Spartan for Molecular Modeling
GaussView/Gaussian A brief introduction to using GaussView/Gaussian for Molecular Modeling
WebMO A brief introduction to using WebMO for Molecular Modeling
Quantum Mechanics Links to useful Quantum Mechanics sites on the web
Molecular Modeling Links to useful Molecular Modeling sites on the web